RNA Select
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چکیده
RNAs are versatile molecules capable of an array of functions. In addition to their role as information-carrying intermediaries in gene expression, they act as key catalytic, structural, and regulatory elements in the cell. As highlighted in this issue's Select, recent studies on RNA show how these molecules collaborate with proteins in essential biological processes such as pre-mRNA splicing, mRNA export, and translation control. Additionally, new findings reveal that RNAs can act as enzymes in an efficient, protein-free, self-sustained RNA replication system, providing further support for the notion that life could have originated from an RNA-based world. Spatial restriction of protein synthesis can affect cell fate outcomes during development and contribute to the formation of subcellular compartments in differentiated cells. A number of mRNA transcripts are known to be locally translated, including the oskar transcript of the fruit fly Drosophila. However, the mechanisms that ensure localized translation remain unclear. Oskar mRNAs are locally translated during Drosophila oogenesis. The mRNAs are transported to specific sites in the developing oocyte and maintained in a transla-tionally repressed state until translation is activated. To gain insight into how oskar mRNAs are spatially and temporally regulated, Besse et al. performed a screen using a green fluorescent protein (GFP)-based ''protein trap'' to identify proteins that colocalize with oskar mRNA. The screen uses a transposable element to randomly tag proteins with GFP. Using this approach, they found that the polypyrimidine tract-binding protein (PTB) colocalizes with oskar. Experiments with ptb mutants revealed that PTB is required for proper timing of oskar localization and translation. Furthermore, native gel electrophoresis and RNA affinity pull-down assays showed that PTB binds directly to the oskar 3 0 untranslated region (UTR). PTB binding mediates oligomerization of oskar mRNA into high-order complexes that could be observed by electron microscopy. This work reveals yet another role for the multifunctional PTB protein, which is also involved in pre-mRNA splicing and cap-independent translation initiation of messages containing internal ribosome entry sites. The work also suggests that multimerization of oskar mRNA into ribonu-cleoprotein (RNP) complexes may repress translation by reducing the accessibility of the mRNA to the translation machinery. If DNA is required to make proteins and proteins are required to make DNA, then how were the first proteins made and how was genetic information propagated in early life? RNA may provide answers to these questions because, like DNA, it can carry genetic information and, like proteins, it is …
منابع مشابه
In silico selection of RNA aptamers
In vitro selection of RNA aptamers that bind to a specific ligand usually begins with a random pool of RNA sequences. We propose a computational approach for designing a starting pool of RNA sequences for the selection of RNA aptamers for specific analyte binding. Our approach consists of three steps: (i) selection of RNA sequences based on their secondary structure, (ii) generating a library o...
متن کاملA designed RNA selection: establishment of a stable complex between a target and selectant RNA via two coordinated interactions
In this paper, we describe a new method for selecting RNA aptamers that cooperatively bind to two specific sites within a target RNA. We designed a selection system in which two RNAs, a target RNA and a RNA pool, were assembled by employing a pre-organized GAAA tetraloop-11-nt receptor interaction. This allows us to select the binding sequence against a targeted internal loop as well as a linke...
متن کاملCas-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cas9
MOTIVATION CRISPR-derived RNA guided endonucleases (RGENs) have been widely used for both gene knockout and knock-in at the level of single or multiple genes. RGENs are now available for forward genetic screens at genome scale, but single guide RNA (sgRNA) selection at this scale is difficult. RESULTS We develop an online tool, Cas-Database, a genome-wide gRNA library design tool for Cas9 nuc...
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Aptamers are small nucleic acid ligands that bind to their targets with specificity and high affinity. They are generated by a combinatorial technology, known as SELEX. This in vitro approach uses iterative cycles of enrichment and amplification to select binders from nucleic acid libraries of high complexity. Here we combine SELEX with the yeast three-hybrid system in order to select for RNA a...
متن کاملDNA assays for detection, identification, and individualization of select agent microorganisms.
The purpose of this article is to review the status of DNA assays used for the detection, identification, and individualization of Bacillus anthracis, Yersinia pestis, Francisella tularensis, Burkholderia mallei, and Brucella abortus. These select agent microorganisms are historically significant as they have either been used or experimented with as a bioweapon or as a terrorist agent and are t...
متن کاملCell-free translation of paramyxovirus messenger RNA.
Polypeptides corresponding in electrophoretic mobility to virion polypeptides 1, 3, and 5 were made in a reticulocyte cell-free system to which 18S RNA from Sendai virus-infected cells was added. Immune precipitation was used to select relevant polypeptides from endogenous products. The cell-free product corresponding to virion polypeptide 3 (the nucleocapsid structure unit) was the most abunda...
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عنوان ژورنال:
- Cell
دوره 136 شماره
صفحات -
تاریخ انتشار 2009